Package: linktree
Title: Estimate Transmission Assortativity Coefficients
Version: 0.1.0
Authors@R: 
    c(person("Cyril", "Geismar", email = "c.geismar21@imperial.ac.uk", role = c("aut", "cre", "cph"),
           comment = c(ORCID = "0000-0002-8486-5890")))
Description: Estimates group transmission assortativity coefficients
        from transmission trees. Group transmission assortativity
        coefficients measure the tendency for individuals to transmit
        within their own group (e.g. age group, vaccination status, or
        location) compared to other groups. The package requires
        information on who infected whom, group membership for all
        individuals, and the relative sizes of each group in the
        population. For more details see Geismar et al. (2024)
        <doi:10.1371/journal.pone.0313037>.
License: CC BY 4.0
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), pak, epicontacts,
        visNetwork
Config/testthat/edition: 3
Depends: R (>= 3.5)
LazyData: true
VignetteBuilder: knitr
URL: https://github.com/CyGei/linktree,
        https://cygei.github.io/linktree/
BugReports: https://github.com/CyGei/linktree/issues
Repository: https://cygei.r-universe.dev
Date/Publication: 2026-06-25 14:29:39 UTC
RemoteUrl: https://github.com/cygei/linktree
RemoteRef: HEAD
RemoteSha: 288487bce01c806dc7683f5c4ba89bc168883db1
NeedsCompilation: no
Packaged: 2026-06-25 14:56:53 UTC; root
Author: Cyril Geismar [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0002-8486-5890>)
Maintainer: Cyril Geismar <c.geismar21@imperial.ac.uk>