Introduction | Methods | Input Requirements | Usage | PERMANOVA | Chi-Square Test | Advanced Usage | Using Custom Distance Functions | Note | Future Developments
Package: mixtree 0.0.1
mixtree: A Statistical Framework for Comparing Sets of Trees
Apply hypothesis testing methods to assess differences between sets of trees.
Authors:
mixtree_0.0.1.tar.gz
mixtree_0.0.1.zip(r-4.7)mixtree_0.0.1.zip(r-4.6)mixtree_0.0.1.zip(r-4.5)
mixtree_0.0.1.tgz(r-4.6-any)mixtree_0.0.1.tgz(r-4.5-any)
mixtree_0.0.1.tar.gz(r-4.7-any)mixtree_0.0.1.tar.gz(r-4.6-any)
mixtree_0.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
mixtree/json (API)
| # Install 'mixtree' in R: |
| install.packages('mixtree', repos = c('https://cygei.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/cygei/mixtree/issues
Pkgdown/docs site:https://cygei.github.io
Last updated from:4e0853f0ec. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 198 | ||
| source / vignettes | OK | 280 | ||
| linux-release-x86_64 | OK | 205 | ||
| macos-release-arm64 | OK | 163 | ||
| macos-oldrel-arm64 | OK | 163 | ||
| windows-devel | OK | 125 | ||
| windows-release | OK | 91 | ||
| windows-oldrel | OK | 102 | ||
| wasm-release | OK | 180 |
Exports:abouheifeuclideankendallmake_treepatristicshuffle_graph_idstree_testvalidate_tree
Dependencies:cliclustercpp11glueigraphlatticelifecyclemagrittrMASSMatrixmgcvnlmepermutepkgconfigrlangvctrsvegan
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Compute the Abouheif distance matrix | abouheif |
| Calculate the Euclidean distance between two distance matrices. | euclidean |
| Compute the Kendall distance matrix | kendall |
| Generate a Transmission Tree | make_tree |
| Compute the Patristic distance matrix | patristic |
| Shuffle Node IDs in a Graph | shuffle_graph_ids |
| Test Differences Between Sets of Transmission Trees | tree_test |
| Validate a Transmission Tree | validate_tree |
